Was able to get the bike rewired last week and get it fired up and running but noticed a lot of issues on initial starts. After tearing around the neighborhood for a bit and realizing the issue was actually getting a bit worse, decided to tear into the bike more to address the issues. As it turns out, with the pod filters and larger cherry bomb muffler I am going to have to bump up the jet settings on the carbs to push more gas into the mix. Hopefully that will resolve the issues and hoping the vacuum settings will be dead on, we shall see. Thanks to Josh from Wrench Works for helping to battle the carb issue. Two heads are better than one when dealing with a 4 carb setup.